PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g33010
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family ARF
Protein Properties Length: 578aa    MW: 63282.8 Da    PI: 5.2605
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g33010genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.21.5e-23120221199
                EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                f k+ltpsd+++ g +++p+ +a++          ++ +  +l ++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+  ++s  e++
  Tp5g33010 120 FAKILTPSDANNGGGFSVPRYCADSVfppldfqADPPVQ--KLFITDIHGVVWDFRHIYRGTPRRHLLTTGWSKFVNNKKLIAGDSVVFM--RKSVDEMF 215
                89*********************999*****95444444..8************************************************..44788899 PP

                EEEE-S CS
         B3  94 vkvfrk 99 
                ++v+r+
  Tp5g33010 216 IGVRRA 221
                ***997 PP

2Auxin_resp86.55.2e-29277359183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+++a+++ +FevvY+P a++s+Fvvk+e+ve+++ + +++G+R+km +etedss++++ +G+++++ + ++  W++S+W++L+
   Tp5g33010 277 AINKAAKGLPFEVVYYPTAGWSDFVVKAEDVESSMATFWTPGTRVKMPMETEDSSRITWfQGIISSTFQ-ETGPWRGSPWKQLQ 359
                 678999*****************************************************9999999988.8889********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.14E-29111225IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-32114221IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-20120222IPR003340B3 DNA binding domain
PfamPF023624.8E-21120221IPR003340B3 DNA binding domain
PROSITE profilePS5086312.633120222IPR003340B3 DNA binding domain
CDDcd100175.33E-20120216No hitNo description
PfamPF065076.8E-24277359IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MSPSASATAD IPREVDPRIW RACAGASVQI PSLYSRVYYF PQGHVEHCCA SSVINSFPSS  60
TAPVPCVVNS IELLADPITD EVFAHLALQP VAPEQFIPPK LPRFGSYLID EEENNKVVTF  120
AKILTPSDAN NGGGFSVPRY CADSVFPPLD FQADPPVQKL FITDIHGVVW DFRHIYRGTP  180
RRHLLTTGWS KFVNNKKLIA GDSVVFMRKS VDEMFIGVRR APISNNGGTG FYGGGDEFYS  240
GYYPSSGGGA KEDDASAKKG FRRTGKGKLT AEAVSEAINK AAKGLPFEVV YYPTAGWSDF  300
VVKAEDVESS MATFWTPGTR VKMPMETEDS SRITWFQGII SSTFQETGPW RGSPWKQLQI  360
TWDEPEILQN LKRVNPWQVE TVDNANQLHA TYPPTKRLKF PHTANGFSSG EGEMLYSGRG  420
LSSAAPGGDP YLFPYTTFPA GMQGARHCEF GSFNSTGFIE ENPPRLCINN FFSPLPGLGK  480
VSTEMNFGSP PSDDLSPNSN TTNLSSGNDP VGNRGPNSAR ANSFQLFGKV INVQDLSESG  540
LAESGLYEED GSKESSDNEV LDETQLSLTY APQRMRRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-671538751395Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006390047.10.0hypothetical protein EUTSA_v10018331mg
SwissprotQ84WU60.0ARFQ_ARATH; Auxin response factor 17
TrEMBLV4KJ900.0V4KJ90_EUTSA; Auxin response factor
STRINGscaffold_202748.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.10.0auxin response factor 17